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  "Type": "Package",
  "Title": "Import, Assemble, and Deduplicate Bibliographic Datasets",
  "Version": "0.4.0",
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  "Description": "A critical first step in systematic literature reviews and\nmining of academic texts is to identify relevant texts from a\nrange of sources, particularly databases such as 'Web of\nScience' or 'Scopus'. These databases often export in different\nformats or with different metadata tags. 'synthesisr' expands\non the tools outlined by Westgate (2019)\n<doi:10.1002/jrsm.1374> to import bibliographic data from a\nrange of formats (such as 'bibtex', 'ris', or 'ciw') in a\nstandard way, and allows merging and deduplication of the\nresulting dataset.",
  "Date": "2023-06-07",
  "License": "GPL-3",
  "URL": "https://martinwestgate.com/synthesisr/",
  "BugReports": "https://github.com/mjwestgate/synthesisr/issues",
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  "Encoding": "UTF-8",
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  "Repository": "https://mjwestgate.r-universe.dev",
  "Date/Publication": "2026-03-26 00:48:34 UTC",
  "RemoteUrl": "https://github.com/mjwestgate/synthesisr",
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    "User": "root"
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  "Author": "Martin Westgate [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-0854-2034>),\nEliza Grames [aut] (ORCID: <https://orcid.org/0000-0003-1743-6815>)",
  "Maintainer": "Martin Westgate <martinjwestgate@gmail.com>",
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    "extra/citation.json",
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    "extra/contents.json",
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    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/synthesisr.html",
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      "date": "2020-06-03"
    },
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    "as_tibble",
    "as.bibliography",
    "clean_authors",
    "clean_colnames",
    "clean_df",
    "deduplicate",
    "detect_delimiter",
    "detect_lookup",
    "detect_parser",
    "detect_year",
    "extract_unique_references",
    "find_duplicates",
    "format_citation",
    "fuzz_m_ratio",
    "fuzz_partial_ratio",
    "fuzz_token_set_ratio",
    "fuzz_token_sort_ratio",
    "fuzzdist",
    "override_duplicates",
    "parse_bibtex",
    "parse_pubmed",
    "parse_ris",
    "read_refs",
    "review_duplicates",
    "string_cosine",
    "string_dl",
    "string_hamming",
    "string_jaccard",
    "string_jw",
    "string_lcs",
    "string_lv",
    "string_osa",
    "string_qgram",
    "string_soundex",
    "write_bib",
    "write_refs",
    "write_ris"
  ],
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      "name": "code_lookup",
      "title": "Bibliographic code lookup for search results assembly",
      "object": "code_lookup",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "code",
        "order",
        "category_description",
        "entry_description",
        "field",
        "ris_generic",
        "ris_wos",
        "ris_pubmed",
        "ris_scopus",
        "ris_asp",
        "ris_ovid",
        "ris_synthesisr"
      ],
      "rows": 226,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "synthesisr-package",
      "title": "synthesisr: Import, assemble, and deduplicate bibiliographic datasets",
      "topics": [
        "synthesisr-package",
        "synthesisr"
      ]
    },
    {
      "page": "add_line_breaks",
      "title": "Add line breaks to one or more strings",
      "topics": [
        "add_line_breaks"
      ]
    },
    {
      "page": "bibliography-class",
      "title": "bibliography-class",
      "topics": [
        "as.bibliography",
        "as.data.frame.bibliography",
        "as_tibble.bibliography",
        "bibliography-class",
        "c.bibliography",
        "c.bibliography,",
        "print.bibliography",
        "print.bibliography,",
        "summary.bibliography",
        "summary.bibliography,",
        "[.bibliography"
      ]
    },
    {
      "page": "clean_",
      "title": "Clean a 'tibble' or vector",
      "topics": [
        "clean_",
        "clean_authors",
        "clean_colnames",
        "clean_df"
      ]
    },
    {
      "page": "code_lookup",
      "title": "Bibliographic code lookup for search results assembly",
      "topics": [
        "code_lookup"
      ]
    },
    {
      "page": "deduplicate",
      "title": "Remove duplicates from a bibliographic data set",
      "topics": [
        "deduplicate"
      ]
    },
    {
      "page": "detect_",
      "title": "Detect file formatting information",
      "topics": [
        "detect_",
        "detect_delimiter",
        "detect_lookup",
        "detect_parser",
        "detect_year"
      ]
    },
    {
      "page": "extract_unique_references",
      "title": "Remove duplicates from a bibliographic data set",
      "topics": [
        "extract_unique_references"
      ]
    },
    {
      "page": "find_duplicates",
      "title": "Detect duplicate values",
      "topics": [
        "find_duplicates"
      ]
    },
    {
      "page": "format_citation",
      "title": "Format a citation",
      "topics": [
        "format_citation"
      ]
    },
    {
      "page": "fuzz_",
      "title": "Calculate similarity between two strings",
      "topics": [
        "fuzzdist",
        "fuzz_",
        "fuzz_m_ratio",
        "fuzz_partial_ratio",
        "fuzz_token_set_ratio",
        "fuzz_token_sort_ratio"
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    },
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      "page": "override_duplicates",
      "title": "Manually override duplicates",
      "topics": [
        "override_duplicates"
      ]
    },
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      "page": "parse_",
      "title": "Parse bibliographic text in a variety of formats",
      "topics": [
        "parse_",
        "parse_bibtex",
        "parse_pubmed",
        "parse_ris"
      ]
    },
    {
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      "title": "Import bibliographic data files",
      "topics": [
        "read_refs"
      ]
    },
    {
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      "title": "Manually review potential duplicates",
      "topics": [
        "review_duplicates"
      ]
    },
    {
      "page": "string_",
      "title": "Calculate similarity between two strings",
      "topics": [
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        "string_cosine",
        "string_dl",
        "string_hamming",
        "string_jaccard",
        "string_jw",
        "string_lcs",
        "string_lv",
        "string_osa",
        "string_qgram",
        "string_soundex"
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    },
    {
      "page": "write_refs",
      "title": "Export data to a bibliographic format",
      "topics": [
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        "write_refs",
        "write_ris"
      ]
    }
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        "Deduplicate bibliographic data",
        "Write bibliographic files"
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