{
  "_id": "6ab4f07b3d719c1f8409788c",
  "Package": "synthesisr",
  "Type": "Package",
  "Title": "Import, Assemble, and Deduplicate Bibliographic Datasets",
  "Version": "0.4.0",
  "Authors@R": "c(\nperson(\ngiven = \"Martin\",\nfamily = \"Westgate\",\nrole = c(\"aut\", \"cre\"),\nemail = \"martinjwestgate@gmail.com\",\ncomment = c(ORCID = \"0000-0003-0854-2034\")),\nperson(\ngiven = \"Eliza\",\nfamily = \"Grames\",\nrole = c(\"aut\"),\nemail = \"eliza.grames@uconn.edu\",\ncomment = c(ORCID = \"0000-0003-1743-6815\")))",
  "Description": "A critical first step in systematic literature reviews and\nmining of academic texts is to identify relevant texts from a\nrange of sources, particularly databases such as 'Web of\nScience' or 'Scopus'. These databases often export in different\nformats or with different metadata tags. 'synthesisr' expands\non the tools outlined by Westgate (2019)\n<doi:10.1002/jrsm.1374> to import bibliographic data from a\nrange of formats (such as 'bibtex', 'ris', or 'ciw') in a\nstandard way, and allows merging and deduplication of the\nresulting dataset.",
  "Date": "2023-06-07",
  "License": "GPL-3",
  "URL": "https://martinwestgate.com/synthesisr/",
  "BugReports": "https://github.com/mjwestgate/synthesisr/issues",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://mjwestgate.r-universe.dev",
  "Date/Publication": "2026-03-26 00:48:34 UTC",
  "RemoteUrl": "https://github.com/mjwestgate/synthesisr",
  "RemoteRef": "HEAD",
  "RemoteSha": "afb615890911ca96507f4d9c8c95f00448f7bfc0",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-24 09:38:16 UTC",
    "User": "root"
  },
  "Author": "Martin Westgate [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-0854-2034>),\nEliza Grames [aut] (ORCID: <https://orcid.org/0000-0003-1743-6815>)",
  "Maintainer": "Martin Westgate <martinjwestgate@gmail.com>",
  "_user": "mjwestgate",
  "_type": "src",
  "_file": "synthesisr_0.4.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/f56a1fab5fc64df943820d219d6c56c7f49c443af29eee2b010f7e9728f99403",
  "_filesize": 570212,
  "_sha256": "f56a1fab5fc64df943820d219d6c56c7f49c443af29eee2b010f7e9728f99403",
  "_expires": "2027-01-02T09:42:17.000Z",
  "_created": "2026-09-24T09:38:16.000Z",
  "_published": "2026-09-24T09:42:19.456Z",
  "_jobs": [
    {
      "job": 107577409085,
      "time": 142,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10800663785"
    },
    {
      "job": 107577409007,
      "time": 161,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10801100770"
    },
    {
      "job": 107577408961,
      "time": 191,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10800852720"
    },
    {
      "job": 107577408947,
      "time": 172,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10800783001"
    },
    {
      "job": 107576161665,
      "time": 225,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10800916786"
    },
    {
      "job": 107577409014,
      "time": 129,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10800782964"
    },
    {
      "job": 107577409079,
      "time": 92,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10799834306"
    },
    {
      "job": 107577409109,
      "time": 95,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "10801155409"
    },
    {
      "job": 107577409017,
      "time": 93,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10801150448"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/mjwestgate/actions/runs/35982054099",
  "_status": "success",
  "_upstream": "https://github.com/mjwestgate/synthesisr",
  "_commit": {
    "id": "afb615890911ca96507f4d9c8c95f00448f7bfc0",
    "author": "Martin Westgate <martinjwestgate@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #42 from mjwestgate/development\n\nrelease for v 0.4.0",
    "time": 1774486114
  },
  "_maintainer": {
    "name": "Martin Westgate",
    "email": "martinjwestgate@gmail.com",
    "login": "mjwestgate",
    "description": "Team Leader: Science & Decision Support Team | Atlas of Living Australia | CSIRO ",
    "uuid": 8155991,
    "orcid": "0000-0003-0854-2034"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stringdist",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "unglue",
      "role": "Imports"
    },
    {
      "package": "vroom",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Suggests"
    },
    {
      "package": "devtools",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "readr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "usethis",
      "role": "Suggests"
    }
  ],
  "_owner": "mjwestgate",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-47",
      "n": 1
    },
    {
      "week": "2025-48",
      "n": 1
    },
    {
      "week": "2026-13",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v0.4.0",
      "date": "2026-03-26"
    }
  ],
  "_stars": 35,
  "_contributors": [
    {
      "user": "elizagrames",
      "count": 161,
      "uuid": 21296547
    },
    {
      "user": "mjwestgate",
      "count": 93,
      "uuid": 8155991
    },
    {
      "user": "michaelhm-daf",
      "count": 5,
      "uuid": 111483220
    },
    {
      "user": "pitakakariki",
      "count": 5,
      "uuid": 1023705
    },
    {
      "user": "matherion",
      "count": 1,
      "uuid": 2077242
    },
    {
      "user": "s-arbor",
      "count": 1,
      "uuid": 95004506
    }
  ],
  "_userbio": {
    "uuid": 8155991,
    "type": "user",
    "name": "Martin Westgate",
    "followers": 69,
    "description": "Team Leader: Science & Decision Support Team | Atlas of Living Australia | CSIRO "
  },
  "_downloads": {
    "count": 835,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/synthesisr"
  },
  "_devurl": "https://github.com/mjwestgate/synthesisr",
  "_pkgdown": "https://martinwestgate.com/synthesisr/",
  "_searchresults": 121,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/synthesisr.html"
  ],
  "_homeurl": "https://github.com/mjwestgate/synthesisr",
  "_realowner": "mjwestgate",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.3.0",
      "date": "2020-06-03"
    },
    {
      "version": "0.4.1",
      "date": "2026-03-26"
    }
  ],
  "_exports": [
    "add_line_breaks",
    "as_tibble",
    "as.bibliography",
    "clean_authors",
    "clean_colnames",
    "clean_df",
    "deduplicate",
    "detect_delimiter",
    "detect_lookup",
    "detect_parser",
    "detect_year",
    "extract_unique_references",
    "find_duplicates",
    "format_citation",
    "fuzz_m_ratio",
    "fuzz_partial_ratio",
    "fuzz_token_set_ratio",
    "fuzz_token_sort_ratio",
    "fuzzdist",
    "override_duplicates",
    "parse_bibtex",
    "parse_pubmed",
    "parse_ris",
    "read_refs",
    "review_duplicates",
    "string_cosine",
    "string_dl",
    "string_hamming",
    "string_jaccard",
    "string_jw",
    "string_lcs",
    "string_lv",
    "string_osa",
    "string_qgram",
    "string_soundex",
    "write_bib",
    "write_refs",
    "write_ris"
  ],
  "_datasets": [
    {
      "name": "code_lookup",
      "title": "Bibliographic code lookup for search results assembly",
      "object": "code_lookup",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "code",
        "order",
        "category_description",
        "entry_description",
        "field",
        "ris_generic",
        "ris_wos",
        "ris_pubmed",
        "ris_scopus",
        "ris_asp",
        "ris_ovid",
        "ris_synthesisr"
      ],
      "rows": 226,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "synthesisr-package",
      "title": "synthesisr: Import, assemble, and deduplicate bibiliographic datasets",
      "topics": [
        "synthesisr-package",
        "synthesisr"
      ]
    },
    {
      "page": "add_line_breaks",
      "title": "Add line breaks to one or more strings",
      "topics": [
        "add_line_breaks"
      ]
    },
    {
      "page": "bibliography-class",
      "title": "bibliography-class",
      "topics": [
        "as.bibliography",
        "as.data.frame.bibliography",
        "as_tibble.bibliography",
        "bibliography-class",
        "c.bibliography",
        "c.bibliography,",
        "print.bibliography",
        "print.bibliography,",
        "summary.bibliography",
        "summary.bibliography,",
        "[.bibliography"
      ]
    },
    {
      "page": "clean_",
      "title": "Clean a 'tibble' or vector",
      "topics": [
        "clean_",
        "clean_authors",
        "clean_colnames",
        "clean_df"
      ]
    },
    {
      "page": "code_lookup",
      "title": "Bibliographic code lookup for search results assembly",
      "topics": [
        "code_lookup"
      ]
    },
    {
      "page": "deduplicate",
      "title": "Remove duplicates from a bibliographic data set",
      "topics": [
        "deduplicate"
      ]
    },
    {
      "page": "detect_",
      "title": "Detect file formatting information",
      "topics": [
        "detect_",
        "detect_delimiter",
        "detect_lookup",
        "detect_parser",
        "detect_year"
      ]
    },
    {
      "page": "extract_unique_references",
      "title": "Remove duplicates from a bibliographic data set",
      "topics": [
        "extract_unique_references"
      ]
    },
    {
      "page": "find_duplicates",
      "title": "Detect duplicate values",
      "topics": [
        "find_duplicates"
      ]
    },
    {
      "page": "format_citation",
      "title": "Format a citation",
      "topics": [
        "format_citation"
      ]
    },
    {
      "page": "fuzz_",
      "title": "Calculate similarity between two strings",
      "topics": [
        "fuzzdist",
        "fuzz_",
        "fuzz_m_ratio",
        "fuzz_partial_ratio",
        "fuzz_token_set_ratio",
        "fuzz_token_sort_ratio"
      ]
    },
    {
      "page": "override_duplicates",
      "title": "Manually override duplicates",
      "topics": [
        "override_duplicates"
      ]
    },
    {
      "page": "parse_",
      "title": "Parse bibliographic text in a variety of formats",
      "topics": [
        "parse_",
        "parse_bibtex",
        "parse_pubmed",
        "parse_ris"
      ]
    },
    {
      "page": "read_refs",
      "title": "Import bibliographic data files",
      "topics": [
        "read_refs"
      ]
    },
    {
      "page": "review_duplicates",
      "title": "Manually review potential duplicates",
      "topics": [
        "review_duplicates"
      ]
    },
    {
      "page": "string_",
      "title": "Calculate similarity between two strings",
      "topics": [
        "string_",
        "string_cosine",
        "string_dl",
        "string_hamming",
        "string_jaccard",
        "string_jw",
        "string_lcs",
        "string_lv",
        "string_osa",
        "string_qgram",
        "string_soundex"
      ]
    },
    {
      "page": "write_refs",
      "title": "Export data to a bibliographic format",
      "topics": [
        "write_bib",
        "write_refs",
        "write_ris"
      ]
    }
  ],
  "_pkglogo": "https://github.com/mjwestgate/synthesisr/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/mjwestgate/synthesisr/raw/HEAD/README.md",
  "_rundeps": [
    "bit",
    "bit64",
    "cli",
    "cpp11",
    "crayon",
    "dplyr",
    "generics",
    "glue",
    "hms",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "rlang",
    "stringdist",
    "stringi",
    "stringr",
    "tibble",
    "tidyselect",
    "tzdb",
    "unglue",
    "utf8",
    "vctrs",
    "vroom",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "overview.Rmd",
      "filename": "overview.html",
      "title": "Overview",
      "author": "Martin Westgate & Eliza Grames",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Read and assemble bibliographic files",
        "Deduplicate bibliographic data",
        "Write bibliographic files"
      ],
      "created": "2025-02-21 00:34:25",
      "modified": "2026-03-26 00:48:34",
      "commits": 3
    }
  ],
  "_score": 8.28006592844207,
  "_indexed": true,
  "_nocasepkg": "synthesisr",
  "_universes": [
    "mjwestgate"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.4.0",
      "date": "2026-09-24T09:40:44.000Z",
      "distro": "resolute",
      "commit": "afb615890911ca96507f4d9c8c95f00448f7bfc0",
      "fileid": "https://r2.ropensci.org/f21509f3c273fe7307f121137ced687515685149ffa22484366ffe07f4df7b5f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mjwestgate/actions/runs/35982054099"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.4.0",
      "date": "2026-09-24T09:40:56.000Z",
      "distro": "resolute",
      "commit": "afb615890911ca96507f4d9c8c95f00448f7bfc0",
      "fileid": "https://r2.ropensci.org/0224b92739b28a994f4345250b06dd5fd91d21a19a7f500daa4f36ab5fa72ef6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mjwestgate/actions/runs/35982054099"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.4.0",
      "date": "2026-09-24T09:40:53.000Z",
      "commit": "afb615890911ca96507f4d9c8c95f00448f7bfc0",
      "fileid": "https://r2.ropensci.org/bf3da7797b5d8cf7cd8004d21baef8da8ea7ab359b970eaa66583e85cc039eef",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mjwestgate/actions/runs/35982054099"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.4.0",
      "date": "2026-09-24T09:40:39.000Z",
      "commit": "afb615890911ca96507f4d9c8c95f00448f7bfc0",
      "fileid": "https://r2.ropensci.org/aa4fb389bc4a035a3dd1ad19ab828f10ac501dd58d74503fe56349d269fcde3c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mjwestgate/actions/runs/35982054099"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.4.0",
      "date": "2026-09-24T09:40:47.000Z",
      "commit": "afb615890911ca96507f4d9c8c95f00448f7bfc0",
      "fileid": "https://r2.ropensci.org/15b587a6aff6365119e1a016497840204c9f7a67d02b78d364ef245c9882c221",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mjwestgate/actions/runs/35982054099"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.4.0",
      "date": "2026-09-24T09:39:37.000Z",
      "commit": "afb615890911ca96507f4d9c8c95f00448f7bfc0",
      "fileid": "https://r2.ropensci.org/203959e9cd7272b69a3023ada8a08978e0530a745380f29dee6660ee59331f82",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mjwestgate/actions/runs/35982054099"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.4.0",
      "date": "2026-09-24T09:39:39.000Z",
      "commit": "afb615890911ca96507f4d9c8c95f00448f7bfc0",
      "fileid": "https://r2.ropensci.org/0521bc86c97e9ef9eb72f75a87133f484fd02564331d3989b6e4aa8b4687ecbb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mjwestgate/actions/runs/35982054099"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.4.0",
      "date": "2026-09-24T09:39:45.000Z",
      "commit": "afb615890911ca96507f4d9c8c95f00448f7bfc0",
      "fileid": "https://r2.ropensci.org/2250bfdb123da082965362e37da2baa82e06add48ce816b88d88a14fe31ed000",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mjwestgate/actions/runs/35982054099"
    }
  ]
}